Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs78455924 chr7:6777951 T/C 3.63E-5 490 31 30.2 35.28 KM Plot
PRAD rs78498627 chr2:178802387 T/A 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs78509203 chr13:20175628 G/A 2.87E-5 486 30.9 31.27 22.67 KM Plot
PRAD rs7852977 chr9:118227973 G/A 0 492 15.03 30.8 30.97 KM Plot
PRAD rs78596995 chr1:1157862 C/T 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs7861677 chr9:138775419 A/G 0.000176 485 31.33 31.23 17.15 KM Plot
PRAD rs78677559 chr11:6949149 A/T 1.54E-12 489 31.13 28.48 18.13 KM Plot
PRAD rs78686882 chr7:6782940 C/T 6.16E-11 485 31.23 26.7 33.75 KM Plot
PRAD rs78737786 chr9:72947072 C/A 1.75E-5 492 30.8 31.4 22.45 KM Plot
PRAD rs78798618 chr2:239189207 T/C 7.44E-6 493 31.13 30.35 11.57 KM Plot
PRAD rs78817991 chr5:154156783 G/A 0 490 29.97 36.05 4.87 KM Plot
PRAD rs78818793 chr5:154170349 C/A 0 491 30.2 33.47 4.87 KM Plot
PRAD rs78839410 chr2:239189283 T/C 7.44E-6 493 31.13 30.35 11.57 KM Plot
PRAD rs78861851 chr9:72843579 T/C 1.75E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs78878792 chr5:154138063 A/G 0 490 29.8 35.57 4.87 KM Plot